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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015839723.1_cds_XP_016507377.1_20508
CDS Infomation

[gene=LOC107825055] [db_xref=GeneID:107825055] [protein=probable pectate lyase 12 isoform X2] [protein_id=XP_016507377.1] [location=complement(join(19228..19474,24158..24363,26463..26654,26736..27450,27538..27539))] [gbkey=CDS]
Sequence

ATGAGGGTAAATGAGTCCATTGCGAGAAGACAAATACTTGAAACAACTGTTAGAGATAGT
AGTAATAAATGTCTAACCGGAAATCCAATAGACGATTGCTGGCAATGCGACTCAAACTGG
GCTAAAAACCGACAAAGGTTAGCAGACTGCGCCATTGGGTTCGGTCAGGGTGCAATGGGT
GGGAAAAACGGTCAGATCTACGTAGTCACCGACTCCTCCGACAGAGACACCGTTAACCCT
ACTCCGGGCACTCTCCGGCACGCCGTCGTTCAAGAGGAACCTCTCTGGATCGTGTTCGCC
GCCGACATGGTCATTAAGCTAAAACACGAGCTTATTGTGAACAGCTACAAAACCATCGAC
GGCCGCGGCGCGAACGTTCACATTACCGGCGGCGGATGCATAACGTTACAGTACGTGAGC
AATGTGATTATACATAATGTTCATATTTACAATTGTGTCCCTTCGGGTAATACTAATATA
CGGTCGAGTCCAACGCATGTTGGGTATAGAGGCAAATCGGACGGTGATGGAATATCCATA
TTTGGATCTCGGAATATTTGGGTTGATCATTGTGCATTGTCTCATTGTACGGACGGCTTG
ATTGATGCTATTATGGGGTCCACTGCTATTACTATTTCGAATAGCTATTTTAGCCATCAT
GATGATGTCATGCTCTTGGGACATGATGATAAATACTTGCCAGATTCAGGAATGCAGGTG
ACAATAGCGTTTAATCATTTTGGAGAAGGGTTAGTGCAAAGAATGCCAAGGATTAGAAGA
GGATACGTACATGTGGTTAACAACGATTTCACAGAATGGCAAATGTATGCAATTGGTGGT
AGCGCAAGTCCCACTATTAATAGTCAGGGCAATCGCTATACTGCTCCTGATGACCCTAAT
TTGAAGGAGGTGACAAAGCGGGAAGACACAGACACTGGGAAGTGGAACGACTGGAACTGG
AGGAGTGATGGCGACGTTATGGTTAATGGTGCATTTTTTGTGCCTTCAGGCCAAGGCATT
AGCACCCAATATGTCAAAGCTTACAGCGTCGACCCCAAATCCGCCCTTCTCATCGATCAG
CTCACCAAAAATGCCGGTGTCCTTGGTGGTCCCAGGGATAACAGTATGAGCATGTCATCC
AAAGGGGGCATTACCGGAGGCGGCGGCGGTCATGCCGAGTCCACTAGCGGCGATGTTGAC
ATGTTCGGAATGATATTCAGCGGTACTGGTGCATCTTCTGCAGGATCATCACCATCACCT
ACAACCACTCCGATCTTACTGTCCTTTTTAATTATTCTGACGTTGTACATAATCACCAAA
CAAGGTGGTCAATTATCTATACCATTATTTCTCTTGCTATAG

Peptide Sequence

PEP ID

XP_016507377.1
PEP Infomation

PREDICTED: probable pectate lyase 12 isoform X2 [Nicotiana tabacum]
Sequence

MRVNESIARRQILETTVRDSSNKCLTGNPIDDCWQCDSNWAKNRQRLADCAIGFGQGAMG
GKNGQIYVVTDSSDRDTVNPTPGTLRHAVVQEEPLWIVFAADMVIKLKHELIVNSYKTID
GRGANVHITGGGCITLQYVSNVIIHNVHIYNCVPSGNTNIRSSPTHVGYRGKSDGDGISI
FGSRNIWVDHCALSHCTDGLIDAIMGSTAITISNSYFSHHDDVMLLGHDDKYLPDSGMQV
TIAFNHFGEGLVQRMPRIRRGYVHVVNNDFTEWQMYAIGGSASPTINSQGNRYTAPDDPN
LKEVTKREDTDTGKWNDWNWRSDGDVMVNGAFFVPSGQGISTQYVKAYSVDPKSALLIDQ
LTKNAGVLGGPRDNSMSMSSKGGITGGGGGHAESTSGDVDMFGMIFSGTGASSAGSSPSP
TTTPILLSFLIILTLYIITKQGGQLSIPLFLLL

Transcript Sequence

Gene sequence data has not been registered.